BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018E01LP1|AL427320
(693 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig880 813 0.0
3x_Contig866 543 e-154
>3x_Contig880
Length = 2617
Score = 813 bits (410), Expect = 0.0
Identities = 441/448 (98%), Gaps = 4/448 (0%)
Strand = Plus / Plus
Query: 249 acacgtctagcgatgttacttaacattttcttatccatttcagcttcggtcaacccgtac 308
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 acacgtctagcgatgttacttaacattgtcttatccatttcagcttcggtcaacccgtac 60
Query: 309 cgttgcttgatgatatcgagaatcccggattcttcc-acgtactgtgccactctaaactt 367
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 cgttgcttgatgatatcgagaatcccggattcttcccacgtactgtgccactctaaactt 120
Query: 368 tgccactgtattatcgtcatcgttacacaacgactctagaatagcgtcgaatttgagatc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgccactgtattatcgtcatcgttacacaacgactctagaatagcgtcgaatttgagatc 180
Query: 428 aacttgtaaaatctttggaattttactcaagacaaaccgttgcaaagaaaggtttgattc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacttgtaaaatctttggaattttactcaagacaaaccgttgcaaagaaaggtttgattc 240
Query: 488 caacggatggttatgataaggttcaatcttggttaccacgaagggacccttgatagtctc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caacggatggttatgataaggttcaatcttggttaccacgaagggacccttgatagtctc 300
Query: 548 ctgagagtctgcaactgctgcaactgccgctgcgataggag--gtngacagccgcatcat 605
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 301 ctgagagtctgcaactgctgcaactgccgctgcgatagcagcagtc-acagccgcatcat 359
Query: 606 catcctcatcatcgtcctcatcctccgctctaccatcttcggccaaattcgtatgaccat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 catcctcatcatcgtcctcatcctccgctctaccatcttcggccaaattcgtatgaccat 419
Query: 666 tatggtgattcgaaccagacgacgaaga 693
||||||||||||||||||||||||||||
Sbjct: 420 tatggtgattcgaaccagacgacgaaga 447
>3x_Contig866
Length = 4028
Score = 543 bits (274), Expect = e-154
Identities = 280/282 (99%)
Strand = Plus / Plus
Query: 1 tatgtgcactatcaacatgtgattggtgttgttcctggtgttgtagttgttgctgttgct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3747 tatgtccactatcaacatgtgattggtgttgttcctggtgttgtagttgttgctgttgct 3806
Query: 61 gttggtgatgatgctgaacgtcgcgttgttgaccttcgggtagttggtgttggtggtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 gttggtgatgatgctgaacgtcgcgttgttgaccttcgggtagttggtgttggtggtgag 3866
Query: 121 ctggtatcgatggatgatgatggtgttgtacttgatggtggtcaccgccagtgaattgat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3867 ctggtatcgatggatgatgatggtgttgtacttgatggtggtcaccgccagtcaattgat 3926
Query: 181 gagcggtgggcattgcgtatacgccatccttctttcttttcaagacgaatctggccttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 gagcggtgggcattgcgtatacgccatccttctttcttttcaagacgaatctggccttat 3986
Query: 241 acgtggtaacacgtctagcgatgttacttaacattttcttat 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 acgtggtaacacgtctagcgatgttacttaacattttcttat 4028
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5630
Number of Sequences: 1807
Number of extensions: 5630
Number of successful extensions: 346
Number of sequences better than 1.0e-20: 2
length of query: 693
length of database: 10,358,551
effective HSP length: 16
effective length of query: 677
effective length of database: 10,329,639
effective search space: 6993165603
effective search space used: 6993165603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)